Shunpei Okada

Assistant Professor

From Tochigi prefecture

Postgraduate course of Tokyo University

Doctor of Engineering

Specializes RNA Biology and Virology

s.okada (A) med.shimane-u.ac.jp   (A) change to @

Papers

  1. Noda Y, Okada S, Suzuki T. Regulation of A-to-I RNA editing and stop codon recoding to control selenoprotein expression during skeletal myogenesis. Nat Commun. 13(1):2503 (2022).
  2. Yang Y, Okada S, Sakurai MAdenosine-to-inosine RNA editing in neurological development and disease. RNA Biol. 18(7):999-1013 (2021).
  3. Sakurai M, Okada S, Ueda H, Yang Y. Discovering A-to-I RNA Editing Through Chemical Methodology “ICE-seq”. Methods Mol Biol. 2181:113-148 (2021).
  4. Suzuki T, Yashiro Y, Kikuchi I, Ishigami Y, Saito H, Matsuzawa I, Okada S, Mito M, Iwasaki S, Ma D, Zhao X, Asano K, Lin H, Kirino Y, Sakaguchi Y, Suzuki TComplete chemical structures of human mitochondrial tRNAs. Nat Commun. 11(1):4269 (2020).
  5. Hojo H, Yashiro Y, Noda Y, Ogami K, Yamagishi R, Okada S, Hoshino SI, Suzuki TThe RNA-binding protein QKI-7 recruits the poly(A) polymerase GLD-2 for 3′ adenylation and selective stabilization of microRNA-122. J Biol Chem. 295(2):390-402 (2020).
  6. Okada S, Ueda H, Noda Y, Suzuki T Transcriptome-wide identification of A-to-I RNA editing sites using ICE-seq. 156:66-78 (2019). 
  7. Uchida H, Matsumura S, Okada S, Suzuki T, Minami T, Ito S. RNA editing enzyme ADAR2 is a mediator of neuropathic pain after peripheral nerve injury. FASEB J. 31(5):1847-1855 (2017). 
  8. Ishida K, Miyauchi K, Kimura Y, Mito M, Okada S, Suzuki T, Nakagawa S.Regulation of gene expression via retrotransposon insertions and the noncoding RNA 4.5S RNAH. Genes Cells. 20(11):887-901 (2015).
  9. Okada S, Sakurai M, Ueda H, Suzuki T. Biochemical and Transcriptome-Wide Identification of A-to-I RNA Editing Sites by ICE-Seq. Methods Enzymol. 560:331-353 (2015).
  10. Suzuki T, Ueda H, Okada S, Sakurai M. Transcriptome-wide identification of adenosine-to-inosine editing using the ICE-seq method. Nat Protoc. 10(5):715-732 (2015).
  11. Sakurai M, Ueda H, Yano T, Okada S, Terajima H, Mitsuyama T, Toyoda A, Fujiyama A, Kawabata H, Suzuki T.A biochemical landscape of A-to-IRNA editing in the human brain transcriptome. Genome Res. 24(3):522-534 (2014).

 

Grant

Grant-in-Aid for Early-Career Scientists

2019-2022 19K16037